A general phylogeny structure returned from pasring Newick. More...

#include <shiba.h>

Data Fields
int	nnodes
	Number of nodes in phylogeny, including 0 or root node.

int *	parent
	index of parent node

int *	ndaughter
	Number of daughters for each node.

int *	depth
	Depth in n nodes from root (root has depth of zero)

double *	bl
	Branch length of the proximal edge.

int	ultra
	0/1 flagging an ultrametric tree.

double *	age
	Age of the node, in units of branch length (valid only for ultrametric trees).

char **	taxon
	Name of the node, NULL for missing names.

Detailed Description

A general phylogeny structure returned from pasring Newick.

Definition at line 46 of file shiba.h.

Field Documentation

int* phylo::ndaughter

Number of daughters for each node.

Terminals have zero

Definition at line 49 of file shiba.h.

int phylo::ultra

0/1 flagging an ultrametric tree.

Definition at line 52 of file shiba.h.

The documentation for this struct was generated from the following file: