From BioDivBorneo2010
#NEXUS
[written Wed Jul 02 05:01:05 WIT 2008 by Mesquite version 1.12 (build h66) at calyx/127.0.0.1]
BEGIN TAXA;
TITLE MainTaxa;
DIMENSIONS NTAX=14;
TAXLABELS
Annon Dipter Apocyn Euphor Sapind Laurac Malvac Clusia Rubiac Myrtac Myrist Moraca Sapota Fabaca
;
END;
BEGIN CHARACTERS;
TITLE MainChars;
DIMENSIONS NCHAR=5;
FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3";
CHARSTATELABELS
1 exudate / absent present, 2 exudateColor / clear white yellow red black, 3 stipules / absent present, 4 leafArrangement / alternate opposite whorled, 5 leafComplexity / simple compound ;
MATRIX
Annon 0?000
Dipter {0,1}0100
Apocyn 110{0,1}0
Euphor {0,1}11{0,1}0
Sapind 0?001
Laurac 0?000
Malvac 0?100
Clusia 1{1,2}000
Rubiac 0?110
Myrtac 0?010
Myrist 13000
Moraca 11000
Sapota 11{0,1}00
Fabaca 0?101
;
END;
BEGIN CODONS;
CODESET * UNTITLED = universal: 1 - 5;
END;
BEGIN TREES;
Title APG;
LINK Taxa = MainTaxa;
TRANSLATE
1 Annon,
2 Dipter,
3 Apocyn,
4 Euphor,
5 Sapind,
6 Laurac,
7 Malvac,
8 Clusia,
9 Rubiac,
10 Myrtac,
11 Myrist,
12 Moraca,
13 Sapota,
14 Fabaca;
TREE 'APG++' = (1,(((4,2),5),3));
TREE 'mainAPG+' = (((1,11),6),((10,((8,4),12),((2,7),5)),(13,(9,3))));
END;
BEGIN LABELS;
TAXAGROUPLABEL clade COLOR = (RGB 1.0 0.30588235 0.13333333) ;
TAXAGROUPLABEL magno COLOR = (RGB 0.33333333 0.33333333 1.0) ;
TAXAGROUPLABEL euros1 COLOR = (RGB 1.0 0.066666655 0.066666655) ;
TAXAGROUPLABEL euros2 COLOR = (RGB 0.4 1.0 0.4) ;
TAXAGROUPLABEL asterid COLOR = (RGB 1.0 0.435294150 1.0) ;
END;
BEGIN SETS;
TAXPARTITION * UNTITLED = magno : 1 6 11, euros2 : 2 5 7, asterid : 3 9 13, euros1 : 4 8 12 14;
END;
BEGIN ASSUMPTIONS;
TYPESET * UNTITLED = unord: 1 - 5;
END;
BEGIN MESQUITECHARMODELS;
ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 5;
END;
Begin MESQUITE;
MESQUITESCRIPTVERSION 2;
TITLE AUTO;
tell ProjectCoordinator;
getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
tell It;
setID 0 5452155236397679004;
endTell;
getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
tell It;
setID 0 118675889630776142;
tell It;
setDefaultOrder 0 2 1 3 4;
attachments ;
endTell;
checksum 0 1023547104;
endTell;
getEmployee #mesquite.trees.ManageTrees.ManageTrees;
tell It;
getTreeBlock 0;
tell It;
setSelected 2;
attachments ;
endTell;
endTell;
getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
tell It;
showDataWindow #118675889630776142 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
tell It;
getWindow;
tell It;
setSize 785 430;
setLocation 88 81;
setFont SanSerif;
setFontSize 10;
onInfoBar;
setExplanationSize 30;
setAnnotationSize 20;
setFontIncAnnot 0;
setFontIncExp 0;
getToolPalette;
tell It;
setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
endTell;
setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
colorCells #mesquite.charMatrices.NoColor.NoColor;
setBackground White;
toggleShowNames on;
toggleTight off;
toggleShowChanges on;
toggleSeparateLines off;
toggleShowStates on;
toggleAutoWCharNames on;
toggleShowDefaultCharNames off;
toggleConstrainCW on;
setColumnWidth 16;
toggleBirdsEye off;
toggleColorsPanel off;
birdsEyeWidth 2;
toggleLinkedScrolling on;
toggleScrollLinkedTables off;
endTell;
showWindow;
getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
tell It;
showStrip off;
endTell;
getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
tell It;
togglePanel off;
endTell;
getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
tell It;
setColor Red;
removeColor off;
endTell;
getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
tell It;
autotabOff;
endTell;
endTell;
endTell;
getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord;
tell It;
makeTreeWindow #5452155236397679004 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker;
tell It;
setTreeSource #mesquite.trees.StoredTrees.StoredTrees;
tell It;
setTreeBlock 1;
toggleUseWeights off;
endTell;
setAssignedID 711.1214949550416.8704822215275103149;
getTreeWindow;
tell It;
setSize 520 400;
setLocation 60 10;
setFont SanSerif;
setFontSize 10;
onInfoBar;
setExplanationSize 50;
setAnnotationSize 20;
setFontIncAnnot 0;
setFontIncExp 0;
getToolPalette;
tell It;
endTell;
setActive;
getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator;
tell It;
suppress;
setTreeDrawer #mesquite.trees.DiagonalDrawTree.DiagonalDrawTree;
tell It;
setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard;
tell It;
stretchToggle off;
branchLengthsToggle off;
toggleScale on;
toggleCenter off;
toggleEven off;
namesAngle ?;
endTell;
setEdgeWidth 12;
orientUp;
endTell;
setBackground White;
setBranchColor Black;
showNodeNumbers off;
labelBranchLengths off;
desuppress;
getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames;
tell It;
setColor Black;
toggleColorPartition on;
toggleShadePartition off;
toggleNodeLabels on;
toggleShowNames on;
endTell;
endTell;
setTreeNumber 2;
useSuggestedSize on;
toggleTextOnTree off;
endTell;
showWindow;
getEmployee #mesquite.ornamental.BranchNotes.BranchNotes;
tell It;
setAlwaysOn off;
endTell;
getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition;
tell It;
colorByPartition off;
endTell;
getEmployee #mesquite.trees.ColorBranches.ColorBranches;
tell It;
setColor Red;
removeColor off;
endTell;
endTell;
endTell;
endTell;
end;
